nsv4775334
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:299
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 69 SVs from 17 studies. See in: genome view
Overlapping variant regions from other studies: 10 SVs from 7 studies. See in: genome view
Overlapping variant regions from other studies: 70 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4775334 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | Second Pass | NC_000014.9 | Chr14 | 24,215,086 | 24,215,384 |
| nsv4775334 | Remapped | Perfect | GRCh38.p12 | PATCHES | First Pass | NW_018654722.1 | Chr14|NW_0 18654722.1 | 516,064 | 516,362 |
| nsv4775334 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000014.8 | Chr14 | 24,684,292 | 24,684,590 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16298301 | alu deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16298301 | Remapped | Perfect | NW_018654722.1:g.5 16064_516362del | GRCh38.p12 | First Pass | NW_018654722.1 | Chr14|NW_0 18654722.1 | 516,064 | 516,362 |
| nssv16298301 | Remapped | Perfect | NC_000014.9:g.2421 5086_24215384del | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 24,215,086 | 24,215,384 |
| nssv16298301 | Submitted genomic | NC_000014.8:g.2468 4292_24684590del | GRCh37 (hg19) | NC_000014.8 | Chr14 | 24,684,292 | 24,684,590 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16298301 | <0.001 | 6 | 16834 |