nsv4802325
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:753
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 156 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 27 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 156 SVs from 35 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4802325 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 29,045,065 | 29,045,817 |
| nsv4802325 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003571036.1 | Chr5|NW_00 3571036.1 | 8,582 | 9,334 |
| nsv4802325 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 29,045,172 | 29,045,924 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16325539 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16325539 | Remapped | Perfect | NW_003571036.1:g.8 582_9334del | GRCh38.p12 | Second Pass | NW_003571036.1 | Chr5|NW_00 3571036.1 | 8,582 | 9,334 |
| nssv16325539 | Remapped | Perfect | NC_000005.10:g.290 45065_29045817del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 29,045,065 | 29,045,817 |
| nssv16325539 | Submitted genomic | NC_000005.9:g.2904 5172_29045924del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 29,045,172 | 29,045,924 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16325539 | <0.001 | 4 | 16834 |