nsv481039
- Organism: Homo sapiens
- Study:nstd35 (Kidd et al. 2010)
- Variant Type:novel sequence insertion
- Method Type:Sequencing
- Variant is Defined by:GU268545
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:961
- Description:This variant by definition has no placement. It represents a contig assembled from multiple read pairs, no part of which could be mapped to assembly NCBI35.
- Publication(s):Kidd et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:
Overlapping variant regions from other studies: 863 SVs from 24 studies. See in: genome view
Overlapping variant regions from other studies: 96 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nsv481039 | Remapped | Good | GRCh38.p12 | Primary Assembly | NT_167197.2 | ChrX|NT_16 7197.2 | 88,410 | 89,370 |
| nsv481039 | Remapped | Good | GRCh38.p12 | Primary Assembly | NT_167205.2 | ChrY|NT_16 7205.2 | 88,410 | 89,370 |
| nsv481039 | Remapped | Good | GRCh37.p13 | Primary Assembly | NC_000023.10 | ChrX | 2,139,445 | 2,140,405 |
| nsv481039 | Remapped | Good | GRCh37.p13 | Primary Assembly | NC_000024.9 | ChrY | 2,089,445 | 2,090,405 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3016600 | novel sequence insertion | Sequencing | One end anchored assembly |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv3016600 | Remapped | Good | NT_167197.2:g.8841 0_89370ins?NT_1672 05.2:g.88410_89370 ins? | GRCh38.p12 | NT_167197.2 | ChrX|NT_16 7197.2 | 88,410 | 89,370 |
| nssv3016600 | Remapped | Good | NT_167197.2:g.8841 0_89370ins?NT_1672 05.2:g.88410_89370 ins? | GRCh38.p12 | NT_167205.2 | ChrY|NT_16 7205.2 | 88,410 | 89,370 |
| nssv3016600 | Remapped | Good | NC_000023.10:g.213 9445_2140405ins?NC _000024.9:g.208944 5_2090405ins? | GRCh37.p13 | NC_000023.10 | ChrX | 2,139,445 | 2,140,405 |
| nssv3016600 | Remapped | Good | NC_000023.10:g.213 9445_2140405ins?NC _000024.9:g.208944 5_2090405ins? | GRCh37.p13 | NC_000024.9 | ChrY | 2,089,445 | 2,090,405 |