nsv481590
- Organism: Homo sapiens
- Study:nstd35 (Kidd et al. 2010)
- Variant Type:novel sequence insertion
- Method Type:Sequencing
- Variant is Defined by:GU269096
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,926
- Description:This variant by definition has no placement. It represents a contig assembled from multiple read pairs, no part of which could be mapped to assembly NCBI35.
- Publication(s):Kidd et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 30 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 20 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nsv481590 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_1 | NW_003571036.1 | Chr5|NW_00 3571036.1 | 36,869 | 38,794 |
| nsv481590 | Remapped | Good | GRCh37.p13 | PATCHES | NW_003571036.1 | Chr5|NW_00 3571036.1 | 36,869 | 38,794 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv3011043 | novel sequence insertion | Sequencing | One end anchored assembly |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv3011043 | Remapped | Good | NW_003571036.1:g.3 6869_38794ins? | GRCh38.p12 | NW_003571036.1 | Chr5|NW_00 3571036.1 | 36,869 | 38,794 |
| nssv3011043 | Remapped | Good | NW_003571036.1:g.3 6869_38794ins? | GRCh37.p13 | NW_003571036.1 | Chr5|NW_00 3571036.1 | 36,869 | 38,794 |