nsv481938
- Organism: Homo sapiens
- Study:nstd36 (Mitsui et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH, Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:284,168
- Publication(s):Mitsui et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1631 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 1631 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 428 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv481938 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 161,801,585 | 162,085,752 |
| nsv481938 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 162,222,617 | 162,506,784 |
| nsv481938 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 162,142,607 | 162,426,774 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv650218 | deletion | Oligo aCGH, Sequencing | Probe signal intensity, Sequence alignment | Neoplasms | Pathogenic | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv650218 | Remapped | Perfect | NC_000006.12:g.161 801585_162085752de l | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 161,801,585 | 162,085,752 |
| nssv650218 | Remapped | Perfect | NC_000006.11:g.162 222617_162506784de l | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 162,222,617 | 162,506,784 |
| nssv650218 | Submitted genomic | NC_000006.10:g.162 142607_162426774de l | NCBI36 (hg18) | NC_000006.10 | Chr6 | 162,142,607 | 162,426,774 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|
| nssv650218 | NCBI36: NC_000006.10:g.162142607_162426774del | deletion | Neoplasms | Pathogenic | Submitter |