nsv481961
- Organism: Homo sapiens
- Study:nstd36 (Mitsui et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH, Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:345,834
- Publication(s):Mitsui et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2284 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 2284 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 662 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv481961 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 161,884,354 | 162,230,187 |
| nsv481961 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 162,305,386 | 162,651,219 |
| nsv481961 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 162,225,376 | 162,571,209 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|---|
| nssv650235 | deletion | Oligo aCGH, Sequencing | Probe signal intensity, Sequence alignment | Parkinsonian Disorders | Pathogenic | Submitter |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv650235 | Remapped | Perfect | NC_000006.12:g.161 884354_162230187de l | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 161,884,354 | 162,230,187 |
| nssv650235 | Remapped | Perfect | NC_000006.11:g.162 305386_162651219de l | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 162,305,386 | 162,651,219 |
| nssv650235 | Submitted genomic | NC_000006.10:g.162 225376_162571209de l | NCBI36 (hg18) | NC_000006.10 | Chr6 | 162,225,376 | 162,571,209 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation |
|---|---|---|---|---|---|
| nssv650235 | NCBI36: NC_000006.10:g.162225376_162571209del | deletion | Parkinsonian Disorders | Pathogenic | Submitter |