nsv482156
- Organism: Homo sapiens
- Study:nstd39 (Schuster et al. 2010)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Yes
- Clinical Assertions: No
- Region Size:5,798
- Description:CHRNA10
- Publication(s):Schuster et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 130 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 7 SVs from 4 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv482156 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 3,665,587 | 3,671,384 |
| nsv482156 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 3,686,817 | 3,692,614 |
| nsv482156 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000011.8 | Chr11 | 3,643,393 | 3,649,190 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv558517 | copy number loss | KB1 | Sequencing | Read depth | 1 | 187 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv558517 | Remapped | Perfect | NC_000011.10:g.(36 65587_?)_(?_367138 4)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 3,665,587 | 3,671,384 |
| nssv558517 | Remapped | Perfect | NC_000011.9:g.(368 6817_?)_(?_3692614 )del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 3,686,817 | 3,692,614 |
| nssv558517 | Submitted genomic | NC_000011.8:g.(364 3393_?)_(?_3649190 )del | NCBI35 (hg17) | NC_000011.8 | Chr11 | 3,643,393 | 3,649,190 |
Validation Information
| Variant Call ID | Experiment ID | Sample ID | Method | Analysis | Result |
|---|---|---|---|---|---|
| nssv558517 | 2 | KB1 | Oligo aCGH | Probe signal intensity | Pass |