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dbVar

Database of genomic structural variation

nsv482355

Organism: Homo sapiens

Study:nstd40 (Sharp et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:150,420

Publication(s):Sharp et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 364 SVs from 45 studies. See in: genome view

Remapped(Score: Perfect):142,252,725-142,403,144

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv482355	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	142,252,725	142,403,144
nsv482355	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	143,010,294	143,160,713
nsv482355	Submitted genomic		NCBI34 (hg16)	Primary Assembly		GPC_000000200.1	Chr2	143,221,063	143,371,482

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv3006097	copy number loss	BAC aCGH	Probe signal intensity
nssv3006109	copy number loss	BAC aCGH	Probe signal intensity
nssv3006452	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv3006097	Remapped	Perfect	NC_000002.12:g.(?_ 142252725)_(142403 144_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	142,252,725	142,403,144
nssv3006109	Remapped	Perfect	NC_000002.12:g.(?_ 142252725)_(142403 144_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	142,252,725	142,403,144
nssv3006452	Remapped	Perfect	NC_000002.12:g.(?_ 142252725)_(142403 144_?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	142,252,725	142,403,144
nssv3006097	Remapped	Perfect	NC_000002.11:g.(?_ 143010294)_(143160 713_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	143,010,294	143,160,713
nssv3006109	Remapped	Perfect	NC_000002.11:g.(?_ 143010294)_(143160 713_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	143,010,294	143,160,713
nssv3006452	Remapped	Perfect	NC_000002.11:g.(?_ 143010294)_(143160 713_?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	143,010,294	143,160,713
nssv3006097	Submitted genomic		GPC_000000200.1:g. (?_143221063)_(143 371482_?)del	NCBI34 (hg16)		GPC_000000200.1	Chr2	143,221,063	143,371,482
nssv3006109	Submitted genomic		GPC_000000200.1:g. (?_143221063)_(143 371482_?)del	NCBI34 (hg16)		GPC_000000200.1	Chr2	143,221,063	143,371,482
nssv3006452	Submitted genomic		GPC_000000200.1:g. (?_143221063)_(143 371482_?)del	NCBI34 (hg16)		GPC_000000200.1	Chr2	143,221,063	143,371,482

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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