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dbVar

Database of genomic structural variation

nsv482660

Organism: Homo sapiens

Study:nstd40 (Sharp et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:147,592

Publication(s):Sharp et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 430 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):175,188,994-175,336,585

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv482660	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	175,188,994	175,336,585
nsv482660	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	174,615,997	174,763,588
nsv482660	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000005.7	Chr5	174,596,920	174,744,511

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv3008494	copy number loss	BAC aCGH	Probe signal intensity
nssv3010635	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv3008494	Remapped	Perfect	NC_000005.10:g.(?_ 175188994)_(175336 585_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,188,994	175,336,585
nssv3010635	Remapped	Perfect	NC_000005.10:g.(?_ 175188994)_(175336 585_?)del	GRCh38.p12	First Pass	NC_000005.10	Chr5	175,188,994	175,336,585
nssv3008494	Remapped	Perfect	NC_000005.9:g.(?_1 74615997)_(1747635 88_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	174,615,997	174,763,588
nssv3010635	Remapped	Perfect	NC_000005.9:g.(?_1 74615997)_(1747635 88_?)del	GRCh37.p13	First Pass	NC_000005.9	Chr5	174,615,997	174,763,588
nssv3008494	Submitted genomic		NC_000005.7:g.(?_1 74596920)_(1747445 11_?)del	NCBI34 (hg16)		NC_000005.7	Chr5	174,596,920	174,744,511
nssv3010635	Submitted genomic		NC_000005.7:g.(?_1 74596920)_(1747445 11_?)del	NCBI34 (hg16)		NC_000005.7	Chr5	174,596,920	174,744,511

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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