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dbVar

Database of genomic structural variation

nsv482740

Organism: Homo sapiens

Study:nstd40 (Sharp et al. 2006)
Variant Type:copy number variation
Method Type:BAC aCGH
Submitted on:NCBI34 (hg16)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:156,818

Publication(s):Sharp et al. 2006

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 376 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):78,655,013-78,811,830

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv482740	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nsv482740	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nsv482740	Submitted genomic		NCBI34 (hg16)	Primary Assembly		NC_000010.7	Chr10	79,759,373	79,916,190

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv3005936	copy number loss	BAC aCGH	Probe signal intensity
nssv3006013	copy number gain	BAC aCGH	Probe signal intensity
nssv3007845	copy number loss	BAC aCGH	Probe signal intensity
nssv3007898	copy number loss	BAC aCGH	Probe signal intensity
nssv3008586	copy number loss	BAC aCGH	Probe signal intensity
nssv3010377	copy number loss	BAC aCGH	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv3005936	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3006013	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3007845	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3007898	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3008586	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3010377	Remapped	Perfect	NC_000010.11:g.(?_ 78655013)_(7881183 0_?)del	GRCh38.p12	First Pass	NC_000010.11	Chr10	78,655,013	78,811,830
nssv3005936	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3006013	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3007845	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3007898	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3008586	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3010377	Remapped	Perfect	NC_000010.10:g.(?_ 80414770)_(8057158 7_?)del	GRCh37.p13	First Pass	NC_000010.10	Chr10	80,414,770	80,571,587
nssv3005936	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190
nssv3006013	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)dup	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190
nssv3007845	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190
nssv3007898	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190
nssv3008586	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190
nssv3010377	Submitted genomic		NC_000010.7:g.(?_7 9759373)_(79916190 _?)del	NCBI34 (hg16)		NC_000010.7	Chr10	79,759,373	79,916,190

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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