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dbVar

Database of genomic structural variation

nsv4837

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:insertion
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:53,693

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 293 SVs from 46 studies. See in: genome view

Remapped(Score: Perfect):57,187,767-57,241,459

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv4837	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000005.10	Chr5	57,187,767	57,241,459
nsv4837	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	56,483,594	56,537,286
nsv4837	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000005.8	Chr5	56,519,351	56,573,043

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv8105	insertion	NA12156	Sequencing	Paired-end mapping	3,265
nssv3350	insertion	NA12878	Sequencing	Paired-end mapping	1,451

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv8105	Remapped	Perfect	NC_000005.10:g.(57 187767_?)_(?_57221 005)ins6189	GRCh38.p12	First Pass	NC_000005.10	Chr5	57,187,767	57,221,005
nssv3350	Remapped	Perfect	NC_000005.10:g.(57 206972_?)_(?_57241 459)ins5248	GRCh38.p12	First Pass	NC_000005.10	Chr5	57,206,972	57,241,459
nssv8105	Remapped	Perfect	NC_000005.9:g.(564 83594_?)_(?_565168 32)ins6189	GRCh37.p13	First Pass	NC_000005.9	Chr5	56,483,594	56,516,832
nssv3350	Remapped	Perfect	NC_000005.9:g.(565 02799_?)_(?_565372 86)ins5248	GRCh37.p13	First Pass	NC_000005.9	Chr5	56,502,799	56,537,286
nssv8105	Submitted genomic		NC_000005.8:g.(565 19351_?)_(?_565525 89)ins6189	NCBI35 (hg17)		NC_000005.8	Chr5	56,519,351	56,552,589
nssv3350	Submitted genomic		NC_000005.8:g.(565 38556_?)_(?_565730 43)ins5248	NCBI35 (hg17)		NC_000005.8	Chr5	56,538,556	56,573,043

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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