nsv4858804
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 164 SVs from 28 studies. See in: genome view
Overlapping variant regions from other studies: 15 SVs from 7 studies. See in: genome view
Overlapping variant regions from other studies: 162 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4858804 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000017.11 | Chr17 | 41,071,864 | 41,071,929 |
| nsv4858804 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003871091.1 | Chr17|NW_0 03871091.1 | 221,364 | 221,429 |
| nsv4858804 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000017.10 | Chr17 | 39,228,116 | 39,228,181 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16368595 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16368595 | Remapped | Perfect | NW_003871091.1:g.2 21364_221429del | GRCh38.p12 | Second Pass | NW_003871091.1 | Chr17|NW_0 03871091.1 | 221,364 | 221,429 |
| nssv16368595 | Remapped | Perfect | NC_000017.11:g.410 71864_41071929del | GRCh38.p12 | First Pass | NC_000017.11 | Chr17 | 41,071,864 | 41,071,929 |
| nssv16368595 | Submitted genomic | NC_000017.10:g.392 28116_39228181del | GRCh37 (hg19) | NC_000017.10 | Chr17 | 39,228,116 | 39,228,181 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16368595 | <0.001 | 2 | 16834 |