nsv4869131
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,696
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 990 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 278 SVs from 26 studies. See in: genome view
Overlapping variant regions from other studies: 990 SVs from 64 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4869131 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000022.11 | Chr22 | 22,611,264 | 22,612,959 |
| nsv4869131 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187629.1 | Chr22|NT_1 87629.1 | 246,921 | 248,616 |
| nsv4869131 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000022.10 | Chr22 | 22,953,734 | 22,955,429 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16377233 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16377233 | Remapped | Perfect | NT_187629.1:g.2469 21_248616del | GRCh38.p12 | Second Pass | NT_187629.1 | Chr22|NT_1 87629.1 | 246,921 | 248,616 |
| nssv16377233 | Remapped | Perfect | NC_000022.11:g.226 11264_22612959del | GRCh38.p12 | First Pass | NC_000022.11 | Chr22 | 22,611,264 | 22,612,959 |
| nssv16377233 | Submitted genomic | NC_000022.10:g.229 53734_22955429del | GRCh37 (hg19) | NC_000022.10 | Chr22 | 22,953,734 | 22,955,429 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16377233 | <0.001 | 2 | 16826 |