nsv499345
- Organism: Homo sapiens
- Study:nstd47 (Kidd et al. 2010b)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,072
- Publication(s):Kidd et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 253 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 81 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 264 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 115 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv499345 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,016,562 | 1,017,633 |
| nsv499345 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | 86,152 | 86,975 |
| nsv499345 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,019 | 5,090 |
| nsv499345 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 1,016,562 | 1,017,633 |
| nsv499345 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 1,006,562 | 1,007,633 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv585603 | copy number gain | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv585603 | Remapped | Pass | NT_187681.1:g.8615 2_86975dup | GRCh38.p12 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | 86,152 | 86,975 |
| nssv585603 | Remapped | Perfect | NW_015148966.1:g.4 019_5090dup | GRCh38.p12 | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,019 | 5,090 |
| nssv585603 | Remapped | Perfect | NC_000011.10:g.101 6562_1017633dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,016,562 | 1,017,633 |
| nssv585603 | Remapped | Perfect | NC_000011.9:g.1016 562_1017633dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 1,016,562 | 1,017,633 |
| nssv585603 | Submitted genomic | NC_000011.8:g.1006 562_1007633dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 1,006,562 | 1,007,633 |