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dbVar

Database of genomic structural variation

nsv5005780

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:62,344

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 297 SVs from 60 studies. See in: genome view

Submitted genomic67,159,261-67,221,610

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5005780	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000016.10	Chr16	67,159,264 (-3)	67,221,607 (-3, +3)
nsv5005780	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	67,193,167 (-3)	67,255,510 (-3, +3)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16572159	duplication	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16572159	Submitted genomic		NC_000016.10:g.(67 159261_?)_(6722160 4_67221610)dup	GRCh38 (hg38)		NC_000016.10	Chr16	67,159,264 (-3)	67,221,607 (-3, +3)
nssv16572159	Remapped	Perfect	NC_000016.9:g.(671 93164_?)_(67255507 _67255513)dup	GRCh37.p13	First Pass	NC_000016.9	Chr16	67,193,167 (-3)	67,255,510 (-3, +3)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16572159	<0.001	1	29246

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