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dbVar

Database of genomic structural variation

nsv5021131

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:35,609

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 211 SVs from 46 studies. See in: genome view

Submitted genomic52,137,233-52,172,845

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5021131	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000019.10	Chr19	52,137,235 (-2, +40)	52,172,843 (-33, +2)
nsv5021131	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000019.9	Chr19	52,640,488 (-2, +40)	52,676,096 (-33, +2)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16580512	deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16580512	Submitted genomic		NC_000019.10:g.(52 137233_52137275)_( 52172810_52172845) del	GRCh38 (hg38)		NC_000019.10	Chr19	52,137,235 (-2, +40)	52,172,843 (-33, +2)
nssv16580512	Remapped	Perfect	NC_000019.9:g.(526 40486_52640528)_(5 2676063_52676098)d el	GRCh37.p13	First Pass	NC_000019.9	Chr19	52,640,488 (-2, +40)	52,676,096 (-33, +2)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16580512	<0.001	2	29246

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