nsv5025250
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:4,295,311
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4475 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 2656 SVs from 100 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5025250 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000020.11 | Chr20 | 25,920,604 | 30,215,914 | ||
| nsv5025250 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 25,901,240 | 29,450,590 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16593997 | duplication | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16593997 | Submitted genomic | NC_000020.11:g.259 20604_30215914dup | GRCh38 (hg38) | NC_000020.11 | Chr20 | 25,920,604 | 30,215,914 | ||
| nssv16593997 | Remapped | Pass | NC_000020.10:g.259 01240_29450590dup | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 25,901,240 | 29,450,590 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16593997 | <0.001 | 26 | 29246 |