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dbVar

Database of genomic structural variation

nsv5035171

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:6,319

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 118 SVs from 37 studies. See in: genome view

Submitted genomic21,668,833-21,675,201

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5035171	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000011.10	Chr11	21,668,859 (-26, +47)	21,675,177 (-24, +24)
nsv5035171	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	21,690,405 (-26, +47)	21,696,723 (-24, +24)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16525544	line1 deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16525544	Submitted genomic		NC_000011.10:g.(21 668833_21668906)_( 21675153_21675201) del	GRCh38 (hg38)		NC_000011.10	Chr11	21,668,859 (-26, +47)	21,675,177 (-24, +24)
nssv16525544	Remapped	Perfect	NC_000011.9:g.(216 90379_21690452)_(2 1696699_21696747)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	21,690,405 (-26, +47)	21,696,723 (-24, +24)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16525544	<0.001	3	29246

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