Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv5036777

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:2,592

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 160 SVs from 54 studies. See in: genome view

Submitted genomic29,717,705-29,720,308

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5036777	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000006.12	Chr6	29,717,711 (-6, +6)	29,720,302 (-6, +6)
nsv5036777	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000006.11	Chr6	29,685,488 (-6, +6)	29,688,079 (-6, +6)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16478544	sva deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16478544	Submitted genomic		NC_000006.12:g.(29 717705_29717717)_( 29720296_29720308) del	GRCh38 (hg38)		NC_000006.12	Chr6	29,717,711 (-6, +6)	29,720,302 (-6, +6)
nssv16478544	Remapped	Perfect	NC_000006.11:g.(29 685482_29685494)_( 29688073_29688085) del	GRCh37.p13	First Pass	NC_000006.11	Chr6	29,685,488 (-6, +6)	29,688,079 (-6, +6)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16478544	0.89	26033	29246

You are here: NCBI