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dbVar

Database of genomic structural variation

nsv5036917

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:7,157

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 106 SVs from 22 studies. See in: genome view

Submitted genomic78,251,671-78,258,846

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5036917	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000005.10	Chr5	78,251,681 (-10, +21)	78,258,837 (-21, +9)
nsv5036917	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000005.9	Chr5	77,547,505 (-10, +21)	77,554,661 (-21, +9)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16469860	line1 deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16469860	Submitted genomic		NC_000005.10:g.(78 251671_78251702)_( 78258816_78258846) del	GRCh38 (hg38)		NC_000005.10	Chr5	78,251,681 (-10, +21)	78,258,837 (-21, +9)
nssv16469860	Remapped	Perfect	NC_000005.9:g.(775 47495_77547526)_(7 7554640_77554670)d el	GRCh37.p13	First Pass	NC_000005.9	Chr5	77,547,505 (-10, +21)	77,554,661 (-21, +9)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16469860	<0.001	2	29246

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