nsv5039478
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,032,985
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 31648 SVs from 136 studies. See in: genome view
Overlapping variant regions from other studies: 31648 SVs from 136 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5039478 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000004.12 | Chr4 | 158,116,546 (-7) | 168,149,530 (-2) | ||
nsv5039478 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 159,037,698 (-7) | 169,070,681 (-2) |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16476014 | inversion | Sequencing | Sequence alignment |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16476014 | Submitted genomic | NC_000004.12:g.(15 8116539_?)_(168149 528_?)inv | GRCh38 (hg38) | NC_000004.12 | Chr4 | 158,116,546 (-7) | 168,149,530 (-2) | ||
nssv16476014 | Remapped | Perfect | NC_000004.11:g.(15 9037691_?)_(169070 679_?)inv | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 159,037,698 (-7) | 169,070,681 (-2) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
---|---|---|---|
nssv16476014 | <0.001 | 1 | 29246 |