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dbVar

Database of genomic structural variation

nsv5040914

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:593

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 937 SVs from 32 studies. See in: genome view

Submitted genomic1,668,671-1,669,265

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5040914	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000023.11	ChrX	1,668,672 (-1, +1)	1,669,264 (-1, +1)
nsv5040914	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000023.10	ChrX	1,787,565 (-1, +1)	1,788,157 (-1, +1)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16589058	alu deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16589058	Submitted genomic		NC_000023.11:g.(16 68671_1668673)_(16 69263_1669265)del	GRCh38 (hg38)		NC_000023.11	ChrX	1,668,672 (-1, +1)	1,669,264 (-1, +1)
nssv16589058	Remapped	Perfect	NC_000023.10:g.(17 87564_1787566)_(17 88156_1788158)del	GRCh37.p13	First Pass	NC_000023.10	ChrX	1,787,565 (-1, +1)	1,788,157 (-1, +1)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16589058	0.071	2061	29236

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