nsv510890
- Organism: Homo sapiens
- Study:nstd49 (Teague et al. 2010)
- Variant Type:complex substitution
- Method Type:Optical mapping
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:71,197
- Publication(s):Teague et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 921 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 730 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 921 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 519 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv510890 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 34,776,437 | 34,847,633 |
| nsv510890 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315915.1 | Chr4|NW_00 3315915.1 | 268,766 | 339,962 |
| nsv510890 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 34,778,059 | 34,849,255 |
| nsv510890 | Remapped | Perfect | GRCh37.p13 | PATCHES | Second Pass | NW_003315915.1 | Chr4|NW_00 3315915.1 | 268,766 | 339,962 |
| nsv510890 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 34,600,625 | 34,671,821 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|---|
| nssv618634 | complex substitution | CHM | Optical mapping | Optical mapping | Hydatidiform Mole | not provided | Submitter | 1,350 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|
| nssv618634 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315915.1 | Chr4|NW_00 3315915.1 | 268,766 | 339,962 |
| nssv618634 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,776,437 | 34,847,633 |
| nssv618634 | Remapped | Perfect | GRCh37.p13 | Second Pass | NW_003315915.1 | Chr4|NW_00 3315915.1 | 268,766 | 339,962 |
| nssv618634 | Remapped | Perfect | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,778,059 | 34,849,255 |
| nssv618634 | Submitted genomic | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,600,625 | 34,671,821 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | Sample ID | Type | Subject Phenotype | Clinical Interpretation | Source of Interpretation | Gender | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|---|
| nssv618634 | CHM | complex substitution | Hydatidiform Mole | not provided | Submitter | Female | 1,350 |