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dbVar

Database of genomic structural variation

nsv511040

Organism: Homo sapiens

Study:nstd49 (Teague et al. 2010)
Variant Type:inversion
Method Type:Optical mapping
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1,658,238

Publication(s):Teague et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 10322 SVs from 116 studies. See in: genome view

Remapped(Score: Pass):19,840,116-21,498,353

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Stop	Outer Stop
nsv511040	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	19,840,116	21,498,353	-
nsv511040	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	20,045,369	22,141,158	-
nsv511040	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000015.8	Chr15	18,305,383	-	19,648,792

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv621631	inversion	GM15510	Optical mapping	Optical mapping	1,740
nssv622409	inversion	GM10860	Optical mapping	Optical mapping	1,998

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Stop	Outer Stop
nssv621631	Remapped	Pass	NC_000015.10:g.(19 840116_?)_(2149835 3_?)inv147515	GRCh38.p12	First Pass	NC_000015.10	Chr15	19,840,116	21,498,353	-
nssv622409	Remapped	Pass	NC_000015.10:g.(20 609870_?)_(2149835 3_?)inv	GRCh38.p12	First Pass	NC_000015.10	Chr15	20,609,870	21,498,353	-
nssv621631	Remapped	Pass	NC_000015.9:g.(200 45369_?)_(22141158 _?)inv147515	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,045,369	22,141,158	-
nssv622409	Remapped	Pass	NC_000015.9:g.(208 15176_?)_(22141158 _?)inv	GRCh37.p13	First Pass	NC_000015.9	Chr15	20,815,176	22,141,158	-
nssv621631	Submitted genomic		NC_000015.8:g.(183 05383_?)_(?_196487 92)inv147515	NCBI35 (hg17)		NC_000015.8	Chr15	18,305,383	-	19,648,792
nssv622409	Submitted genomic		NC_000015.8:g.(190 75190_?)_(?_194501 71)inv	NCBI35 (hg17)		NC_000015.8	Chr15	19,075,190	-	19,450,171

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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