nsv511042
- Organism: Homo sapiens
- Study:nstd49 (Teague et al. 2010)
- Variant Type:inversion
- Method Type:Optical mapping
- Submitted on:NCBI35 (hg17)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:834,007
- Publication(s):Teague et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4001 SVs from 111 studies. See in: genome view
Overlapping variant regions from other studies: 735 SVs from 69 studies. See in: genome view
Overlapping variant regions from other studies: 5122 SVs from 117 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511042 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 22,390,537 | - | - | 23,224,543 |
| nsv511042 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | - | 586,127 | 1,018,559 | - |
| nsv511042 | Remapped | Good | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 22,648,525 | - | - | 23,482,559 |
| nsv511042 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000015.8 | Chr15 | 20,199,889 | - | - | 21,034,000 |
Variant Call Information
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv621632 | Remapped | Perfect | NT_187659.1:g.(787 21_?)_(?_117808)in v4793 | GRCh38.p12 | Second Pass | NT_187659.1 | Chr15|NT_1 87659.1 | 78,721 | - | - | 117,808 |
| nssv621632 | Remapped | Good | NT_187603.1:g.(209 690_?)_(?_248806)i nv4793 | GRCh38.p12 | Second Pass | NT_187603.1 | Chr15|NT_1 87603.1 | 209,690 | - | - | 248,806 |
| nssv622411 | Remapped | Pass | NW_011332701.1:g.( ?_586127)_(1018559 _?)inv | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | - | 586,127 | 1,018,559 | - |
| nssv622411 | Remapped | Good | NC_000015.10:g.(22 390537_?)_(?_23224 543)inv | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 22,390,537 | - | - | 23,224,543 |
| nssv621632 | Remapped | Perfect | NC_000015.10:g.(23 109211_?)_(?_23148 298)inv4793 | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 23,109,211 | - | - | 23,148,298 |
| nssv622411 | Remapped | Good | NC_000015.9:g.(226 48525_?)_(?_234825 59)inv | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,648,525 | - | - | 23,482,559 |
| nssv621632 | Remapped | Perfect | NC_000015.9:g.(227 24770_?)_(?_227638 57)inv4793 | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 22,724,770 | - | - | 22,763,857 |
| nssv622411 | Submitted genomic | NC_000015.8:g.(201 99889_?)_(?_210340 00)inv | NCBI35 (hg17) | NC_000015.8 | Chr15 | 20,199,889 | - | - | 21,034,000 | ||
| nssv621632 | Submitted genomic | NC_000015.8:g.(202 76134_?)_(?_203152 21)inv4793 | NCBI35 (hg17) | NC_000015.8 | Chr15 | 20,276,134 | - | - | 20,315,221 |