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dbVar

Database of genomic structural variation

nsv511044

Organism: Homo sapiens

Study:nstd49 (Teague et al. 2010)
Variant Type:inversion
Method Type:Optical mapping
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:96,076

Publication(s):Teague et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 923 SVs from 73 studies. See in: genome view

Remapped(Score: Perfect):31,314,343-31,410,410

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv511044	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	31,314,343	31,410,410
nsv511044	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_2	Second Pass	NT_187660.1	Chr15\|NT_1 87660.1	3,600,167	3,696,242
nsv511044	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_011332701.1	Chr15\|NW_0 11332701.1	3,487,715	3,583,790
nsv511044	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	31,606,546	31,702,613
nsv511044	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000015.8	Chr15	29,393,838	29,489,905

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv622413	inversion	GM10860	Optical mapping	Optical mapping	1,998

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv622413	Remapped	Good	NT_187660.1:g.(360 0167_?)_(?_3696242 )inv18883	GRCh38.p12	Second Pass	NT_187660.1	Chr15\|NT_1 87660.1	3,600,167	3,696,242
nssv622413	Remapped	Good	NW_011332701.1:g.( 3487715_?)_(?_3583 790)inv18883	GRCh38.p12	Second Pass	NW_011332701.1	Chr15\|NW_0 11332701.1	3,487,715	3,583,790
nssv622413	Remapped	Perfect	NC_000015.10:g.(31 314343_?)_(?_31410 410)inv18883	GRCh38.p12	First Pass	NC_000015.10	Chr15	31,314,343	31,410,410
nssv622413	Remapped	Perfect	NC_000015.9:g.(316 06546_?)_(?_317026 13)inv18883	GRCh37.p13	First Pass	NC_000015.9	Chr15	31,606,546	31,702,613
nssv622413	Submitted genomic		NC_000015.8:g.(293 93838_?)_(?_294899 05)inv18883	NCBI35 (hg17)		NC_000015.8	Chr15	29,393,838	29,489,905

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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