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dbVar

Database of genomic structural variation

nsv511047

Organism: Homo sapiens

Study:nstd49 (Teague et al. 2010)
Variant Type:inversion
Method Type:Optical mapping
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:945,098

Publication(s):Teague et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 2950 SVs from 119 studies. See in: genome view

Remapped(Score: Perfect):21,568,402-22,513,499

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv511047	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000016.10	Chr16	21,568,402	22,513,499
nsv511047	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	591,538	1,536,411
nsv511047	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000016.9	Chr16	21,579,723	22,524,820
nsv511047	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000016.8	Chr16	21,487,224	22,432,321

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv624350	inversion	GM18994	Optical mapping	Optical mapping	1,936
nssv622416	inversion	GM10860	Optical mapping	Optical mapping	1,998

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv624350	Remapped	Good	NW_017852933.1:g.( 591538_?)_(?_15364 11)inv	GRCh38.p12	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	591,538	1,536,411
nssv622416	Remapped	Good	NW_017852933.1:g.( 653640_?)_(?_15364 11)inv267695	GRCh38.p12	Second Pass	NW_017852933.1	Chr16\|NW_0 17852933.1	653,640	1,536,411
nssv622416	Remapped	Perfect	NC_000016.10:g.(21 568402_?)_(?_22451 395)inv267695	GRCh38.p12	First Pass	NC_000016.10	Chr16	21,568,402	22,451,395
nssv624350	Remapped	Perfect	NC_000016.10:g.(21 568402_?)_(?_22513 499)inv	GRCh38.p12	First Pass	NC_000016.10	Chr16	21,568,402	22,513,499
nssv622416	Remapped	Perfect	NC_000016.9:g.(215 79723_?)_(?_224627 16)inv267695	GRCh37.p13	First Pass	NC_000016.9	Chr16	21,579,723	22,462,716
nssv624350	Remapped	Perfect	NC_000016.9:g.(215 79723_?)_(?_225248 20)inv	GRCh37.p13	First Pass	NC_000016.9	Chr16	21,579,723	22,524,820
nssv622416	Submitted genomic		NC_000016.8:g.(214 87224_?)_(?_223702 17)inv267695	NCBI35 (hg17)		NC_000016.8	Chr16	21,487,224	22,370,217
nssv624350	Submitted genomic		NC_000016.8:g.(214 87224_?)_(?_224323 21)inv	NCBI35 (hg17)		NC_000016.8	Chr16	21,487,224	22,432,321

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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