nsv511380
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:42,270
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 249 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 250 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 59 SVs from 19 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv511380 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 77,140,868 | 77,147,083 | 77,159,608 | 77,183,137 |
nsv511380 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 76,770,185 | 76,776,400 | 76,788,925 | 76,812,454 |
nsv511380 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 76,608,121 | 76,614,336 | 76,626,861 | 76,650,390 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv625986 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv625986 | Remapped | Perfect | NC_000007.14:g.(77 140868_77147083)_( 77159608_77183137) del | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 77,140,868 | 77,147,083 | 77,159,608 | 77,183,137 |
nssv625986 | Remapped | Perfect | NC_000007.13:g.(76 770185_76776400)_( 76788925_76812454) del | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 76,770,185 | 76,776,400 | 76,788,925 | 76,812,454 |
nssv625986 | Submitted genomic | NC_000007.12:g.(76 608121_76614336)_( 76626861_76650390) del | NCBI36 (hg18) | NC_000007.12 | Chr7 | 76,608,121 | 76,614,336 | 76,626,861 | 76,650,390 |