nsv511390
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:31,286
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 514 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 514 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 179 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511390 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 113,033,208 | 113,044,364 | 113,046,395 | 113,064,493 |
| nsv511390 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 114,045,437 | 114,056,593 | 114,058,624 | 114,076,722 |
| nsv511390 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 114,114,613 | 114,125,769 | 114,127,800 | 114,145,898 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv625996 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv625996 | Remapped | Perfect | NC_000008.11:g.(11 3033208_113044364) _(113046395_113064 493)del | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 113,033,208 | 113,044,364 | 113,046,395 | 113,064,493 |
| nssv625996 | Remapped | Perfect | NC_000008.10:g.(11 4045437_114056593) _(114058624_114076 722)del | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 114,045,437 | 114,056,593 | 114,058,624 | 114,076,722 |
| nssv625996 | Submitted genomic | NC_000008.9:g.(114 114613_114125769)_ (114127800_1141458 98)del | NCBI36 (hg18) | NC_000008.9 | Chr8 | 114,114,613 | 114,125,769 | 114,127,800 | 114,145,898 |