nsv511530
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,511
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 280 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 280 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 88 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511530 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 60,556,071 | 60,591,339 | 60,592,635 | 60,594,581 |
| nsv511530 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 61,022,789 | 61,058,057 | 61,059,353 | 61,061,299 |
| nsv511530 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 60,092,542 | 60,127,810 | 60,129,106 | 60,131,052 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626152 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626152 | Remapped | Perfect | NC_000014.9:g.(605 56071_60591339)_(6 0592635_60594581)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 60,556,071 | 60,591,339 | 60,592,635 | 60,594,581 |
| nssv626152 | Remapped | Perfect | NC_000014.8:g.(610 22789_61058057)_(6 1059353_61061299)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 61,022,789 | 61,058,057 | 61,059,353 | 61,061,299 |
| nssv626152 | Submitted genomic | NC_000014.7:g.(600 92542_60127810)_(6 0129106_60131052)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 60,092,542 | 60,127,810 | 60,129,106 | 60,131,052 |