nsv511531
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:63,252
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 690 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 690 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 343 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511531 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000014.9 | Chr14 | 41,137,648 | 41,141,021 | 41,200,002 | 41,200,899 |
| nsv511531 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 41,606,851 | 41,610,224 | 41,669,205 | 41,670,102 |
| nsv511531 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 40,676,601 | 40,679,974 | 40,738,955 | 40,739,852 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626153 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626153 | Remapped | Perfect | NC_000014.9:g.(411 37648_41141021)_(4 1200002_41200899)d el | GRCh38.p12 | First Pass | NC_000014.9 | Chr14 | 41,137,648 | 41,141,021 | 41,200,002 | 41,200,899 |
| nssv626153 | Remapped | Perfect | NC_000014.8:g.(416 06851_41610224)_(4 1669205_41670102)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 41,606,851 | 41,610,224 | 41,669,205 | 41,670,102 |
| nssv626153 | Submitted genomic | NC_000014.7:g.(406 76601_40679974)_(4 0738955_40739852)d el | NCBI36 (hg18) | NC_000014.7 | Chr14 | 40,676,601 | 40,679,974 | 40,738,955 | 40,739,852 |