nsv511550
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:27,584
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 349 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 349 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 153 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511550 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 43,828,361 | 43,845,453 | 43,846,176 | 43,855,944 |
| nsv511550 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 44,120,559 | 44,137,651 | 44,138,374 | 44,148,142 |
| nsv511550 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 41,907,851 | 41,924,943 | 41,925,666 | 41,935,434 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626174 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626174 | Remapped | Perfect | NC_000015.10:g.(43 828361_43845453)_( 43846176_43855944) del | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 43,828,361 | 43,845,453 | 43,846,176 | 43,855,944 |
| nssv626174 | Remapped | Perfect | NC_000015.9:g.(441 20559_44137651)_(4 4138374_44148142)d el | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 44,120,559 | 44,137,651 | 44,138,374 | 44,148,142 |
| nssv626174 | Submitted genomic | NC_000015.8:g.(419 07851_41924943)_(4 1925666_41935434)d el | NCBI36 (hg18) | NC_000015.8 | Chr15 | 41,907,851 | 41,924,943 | 41,925,666 | 41,935,434 |