nsv511567
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:80,809
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 599 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 470 SVs from 66 studies. See in: genome view
Overlapping variant regions from other studies: 222 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511567 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 35,877,150 | 35,949,228 | 35,952,207 | 35,957,958 |
| nsv511567 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 35,111,521 | 35,183,599 | 35,186,578 | 35,192,329 |
| nsv511567 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 34,969,022 | 35,041,100 | 35,044,079 | 35,049,830 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626193 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626193 | Remapped | Perfect | NC_000016.10:g.(35 877150_35949228)_( 35952207_35957958) del | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 35,877,150 | 35,949,228 | 35,952,207 | 35,957,958 |
| nssv626193 | Remapped | Perfect | NC_000016.9:g.(351 11521_35183599)_(3 5186578_35192329)d el | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 35,111,521 | 35,183,599 | 35,186,578 | 35,192,329 |
| nssv626193 | Submitted genomic | NC_000016.8:g.(349 69022_35041100)_(3 5044079_35049830)d el | NCBI36 (hg18) | NC_000016.8 | Chr16 | 34,969,022 | 35,041,100 | 35,044,079 | 35,049,830 |