nsv511620
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:52,099
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 242 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 242 SVs from 51 studies. See in: genome view
Overlapping variant regions from other studies: 50 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511620 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 36,258,902 | 36,267,237 | 36,310,296 | 36,311,000 |
| nsv511620 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000019.9 | Chr19 | 36,749,804 | 36,758,139 | 36,801,198 | 36,801,902 |
| nsv511620 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000019.8 | Chr19 | 41,441,644 | 41,449,979 | 41,493,038 | 41,493,742 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626251 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626251 | Remapped | Perfect | NC_000019.10:g.(36 258902_36267237)_( 36310296_36311000) del | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 36,258,902 | 36,267,237 | 36,310,296 | 36,311,000 |
| nssv626251 | Remapped | Perfect | NC_000019.9:g.(367 49804_36758139)_(3 6801198_36801902)d el | GRCh37.p13 | First Pass | NC_000019.9 | Chr19 | 36,749,804 | 36,758,139 | 36,801,198 | 36,801,902 |
| nssv626251 | Submitted genomic | NC_000019.8:g.(414 41644_41449979)_(4 1493038_41493742)d el | NCBI36 (hg18) | NC_000019.8 | Chr19 | 41,441,644 | 41,449,979 | 41,493,038 | 41,493,742 |