nsv511652
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:35,317
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 790 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 705 SVs from 58 studies. See in: genome view
Overlapping variant regions from other studies: 181 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 282 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv511652 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 155,551,462 | 155,551,990 | 155,566,796 | 155,586,778 |
| nsv511652 | Remapped | Pass | GRCh37.p13 | Primary Assembly | Second Pass | NC_000023.10 | ChrX | - | 154,785,892 | 154,796,457 | 154,816,439 |
| nsv511652 | Remapped | Pass | GRCh37.p13 | PATCHES | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | - | 2,990,210 | 3,000,775 | 3,020,757 |
| nsv511652 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 154,434,317 | 154,434,845 | 154,449,651 | 154,469,633 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626287 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626287 | Remapped | Perfect | NC_000023.11:g.(15 5551462_155551990) _(155566796_155586 778)del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 155,551,462 | 155,551,990 | 155,566,796 | 155,586,778 |
| nssv626287 | Remapped | Pass | NW_003871103.3:g.( ?_2990210)_(300077 5_3020757)del | GRCh37.p13 | First Pass | NW_003871103.3 | ChrX|NW_00 3871103.3 | - | 2,990,210 | 3,000,775 | 3,020,757 |
| nssv626287 | Remapped | Pass | NC_000023.10:g.(?_ 154785892)_(154796 457_154816439)del | GRCh37.p13 | Second Pass | NC_000023.10 | ChrX | - | 154,785,892 | 154,796,457 | 154,816,439 |
| nssv626287 | Submitted genomic | NC_000023.9:g.(154 434317_154434845)_ (154449651_1544696 33)del | NCBI36 (hg18) | NC_000023.9 | ChrX | 154,434,317 | 154,434,845 | 154,449,651 | 154,469,633 |