nsv511669
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:71,582
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 532 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 532 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 212 SVs from 10 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv511669 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 97,599,971 | 97,602,569 | 97,655,550 | 97,671,552 |
nsv511669 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 96,854,970 | 96,857,568 | 96,910,549 | 96,926,551 |
nsv511669 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 96,741,626 | 96,744,224 | 96,797,205 | 96,813,207 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv626306 | copy number loss | 1 | SNP array | SNP genotyping analysis | 2,637 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv626306 | Remapped | Perfect | NC_000023.11:g.(97 599971_97602569)_( 97655550_97671552) del | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 97,599,971 | 97,602,569 | 97,655,550 | 97,671,552 |
nssv626306 | Remapped | Perfect | NC_000023.10:g.(96 854970_96857568)_( 96910549_96926551) del | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 96,854,970 | 96,857,568 | 96,910,549 | 96,926,551 |
nssv626306 | Submitted genomic | NC_000023.9:g.(967 41626_96744224)_(9 6797205_96813207)d el | NCBI36 (hg18) | NC_000023.9 | ChrX | 96,741,626 | 96,744,224 | 96,797,205 | 96,813,207 |