nsv513606
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,623
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 441 SVs from 35 studies. See in: genome view
Overlapping variant regions from other studies: 440 SVs from 34 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 7 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv513606 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 48,964,780 | - | 48,966,402 |
| nsv513606 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 48,822,041 | - | 48,822,809 |
| nsv513606 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_004070880.2 | ChrX|NW_00 4070880.2 | - | 1,205,317 | 1,205,831 |
| nsv513606 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 48,706,985 | - | 48,707,753 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626858 | insertion | 1 | Sequencing | Paired-end mapping | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv626858 | Remapped | Pass | NC_000023.11:g.(48 964780_?)_(?_48966 402)ins920 | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 48,964,780 | - | 48,966,402 |
| nssv626858 | Remapped | Pass | NW_004070880.2:g.( ?_1205317)_(?_1205 831)ins920 | GRCh37.p13 | Second Pass | NW_004070880.2 | ChrX|NW_00 4070880.2 | - | 1,205,317 | 1,205,831 |
| nssv626858 | Remapped | Perfect | NC_000023.10:g.(48 822041_?)_(?_48822 809)ins920 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 48,822,041 | - | 48,822,809 |
| nssv626858 | Submitted genomic | NC_000023.9:g.(487 06985_?)_(?_487077 53)ins920 | NCBI36 (hg18) | NC_000023.9 | ChrX | 48,706,985 | - | 48,707,753 |