nsv513680
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,192
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 161 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 161 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 53 SVs from 17 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv513680 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 107,418,771 | - | - | 107,423,962 |
| nsv513680 | Remapped | Pass | GRCh38.p12 | PATCHES | Second Pass | NW_017852930.1 | Chr7|NW_01 7852930.1 | - | 263,663 | 267,973 | - |
| nsv513680 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 107,059,216 | - | - | 107,064,407 |
| nsv513680 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 106,846,452 | - | - | 106,851,643 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626932 | inversion | 1 | Sequencing | Paired-end mapping | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626932 | Remapped | Pass | NW_017852930.1:g.( ?_263663)_(267973_ ?)inv5192 | GRCh38.p12 | Second Pass | NW_017852930.1 | Chr7|NW_01 7852930.1 | - | 263,663 | 267,973 | - |
| nssv626932 | Remapped | Perfect | NC_000007.14:g.(10 7418771_?)_(?_1074 23962)inv5192 | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 107,418,771 | - | - | 107,423,962 |
| nssv626932 | Remapped | Perfect | NC_000007.13:g.(10 7059216_?)_(?_1070 64407)inv5192 | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 107,059,216 | - | - | 107,064,407 |
| nssv626932 | Submitted genomic | NC_000007.12:g.(10 6846452_?)_(?_1068 51643)inv5192 | NCBI36 (hg18) | NC_000007.12 | Chr7 | 106,846,452 | - | - | 106,851,643 |