nsv513683
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,056
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 196 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 219 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 32 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 84 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv513683 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | - | 47,306,914 | 47,316,969 | - |
| nsv513683 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 48,213,882 | - | - | 48,229,885 |
| nsv513683 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_004775431.1 | Chr8|NW_00 4775431.1 | - | 43,072 | 53,127 | - |
| nsv513683 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 48,376,435 | - | - | 48,392,438 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626935 | inversion | 1 | Sequencing | Paired-end mapping | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626935 | Remapped | Pass | NC_000008.11:g.(?_ 47306914)_(4731696 9_?)inv16004 | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | - | 47,306,914 | 47,316,969 | - |
| nssv626935 | Remapped | Pass | NW_004775431.1:g.( ?_43072)_(53127_?) inv16004 | GRCh37.p13 | Second Pass | NW_004775431.1 | Chr8|NW_00 4775431.1 | - | 43,072 | 53,127 | - |
| nssv626935 | Remapped | Perfect | NC_000008.10:g.(48 213882_?)_(?_48229 885)inv16004 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 48,213,882 | - | - | 48,229,885 |
| nssv626935 | Submitted genomic | NC_000008.9:g.(483 76435_?)_(?_483924 38)inv16004 | NCBI36 (hg18) | NC_000008.9 | Chr8 | 48,376,435 | - | - | 48,392,438 |