nsv513723
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:19,295
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 454 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 460 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 13 studies. See in: genome view
Overlapping variant regions from other studies: 200 SVs from 13 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv513723 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | - | 46,951,601 | 46,970,895 |
| nsv513723 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 46,811,214 | - | 46,831,299 |
| nsv513723 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | - | 201,162 | 220,456 |
| nsv513723 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 46,696,158 | - | 46,716,243 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626975 | inversion | 1 | Sequencing | Paired-end mapping | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv626975 | Remapped | Good | NC_000023.11:g.(?_ 46951601)_(?_46970 895)inv20086 | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | - | 46,951,601 | 46,970,895 |
| nssv626975 | Remapped | Good | NW_004166866.1:g.( ?_201162)_(?_22045 6)inv20086 | GRCh37.p13 | Second Pass | NW_004166866.1 | ChrX|NW_00 4166866.1 | - | 201,162 | 220,456 |
| nssv626975 | Remapped | Perfect | NC_000023.10:g.(46 811214_?)_(?_46831 299)inv20086 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 46,811,214 | - | 46,831,299 |
| nssv626975 | Submitted genomic | NC_000023.9:g.(466 96158_?)_(?_467162 43)inv20086 | NCBI36 (hg18) | NC_000023.9 | ChrX | 46,696,158 | - | 46,716,243 |