nsv513996
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:13
- Validation:Not tested
- Clinical Assertions: No
- Region Size:45,777
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 369 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 369 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 117 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv513996 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nsv513996 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nsv513996 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2847880 | copy number loss | NA18522 | Oligo aCGH | Probe signal intensity | 1 | 469 |
| nssv2847881 | copy number loss | NA18852 | Oligo aCGH | Probe signal intensity | 1 | 455 |
| nssv2847882 | copy number loss | NA18910 | Oligo aCGH | Probe signal intensity | 1 | 474 |
| nssv2847883 | copy number loss | NA18911 | Oligo aCGH | Probe signal intensity | 1 | 480 |
| nssv2847884 | copy number loss | NA19102 | Oligo aCGH | Probe signal intensity | 1 | 454 |
| nssv2847885 | copy number loss | NA19103 | Oligo aCGH | Probe signal intensity | 1 | 473 |
| nssv2847886 | copy number loss | NA19108 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2847887 | copy number loss | NA19109 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2847888 | copy number loss | NA19127 | Oligo aCGH | Probe signal intensity | 1 | 428 |
| nssv2847889 | copy number loss | NA19181 | Oligo aCGH | Probe signal intensity | 1 | 471 |
| nssv2847890 | copy number loss | NA21316 | Oligo aCGH | Probe signal intensity | 1 | 469 |
| nssv2847891 | copy number loss | NA21317 | Oligo aCGH | Probe signal intensity | 1 | 480 |
| nssv2847892 | copy number loss | NA21600 | Oligo aCGH | Probe signal intensity | 1 | 437 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2847880 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847881 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847882 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847883 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847884 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847885 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847886 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847887 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847888 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847889 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847890 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847891 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847892 | Remapped | Perfect | NC_000001.11:g.(?_ 105625663)_(105671 439_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 105,625,663 | 105,671,439 |
| nssv2847880 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847881 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847882 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847883 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847884 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847885 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847886 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847887 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847888 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847889 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847890 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847891 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847892 | Remapped | Perfect | NC_000001.10:g.(?_ 106168285)_(106214 061_?)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 106,168,285 | 106,214,061 |
| nssv2847880 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847881 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847882 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847883 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847884 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847885 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847886 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847887 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847888 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847889 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847890 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847891 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 | ||
| nssv2847892 | Submitted genomic | NC_000001.9:g.(?_1 05969808)_(1060155 84_?)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 105,969,808 | 106,015,584 |