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dbVar

Database of genomic structural variation

nsv514027

Organism: Homo sapiens

Study:nstd46 (Campbell et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:6
Validation:Not tested
Clinical Assertions: No
Region Size:121,617

Publication(s):Campbell et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 879 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):189,360,183-189,481,799

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv514027	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nsv514027	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nsv514027	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	187,595,936	187,717,552

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Copy number	Other Calls in this Sample and Study
nssv2852762	copy number loss	NA18542	Oligo aCGH	Probe signal intensity	1	440
nssv2852763	copy number loss	NA18552	Oligo aCGH	Probe signal intensity	1	456
nssv2852764	copy number loss	NA18562	Oligo aCGH	Probe signal intensity	1	468
nssv2852765	copy number loss	NA18967	Oligo aCGH	Probe signal intensity	1	461
nssv2852766	copy number loss	NA18975	Oligo aCGH	Probe signal intensity	1	440
nssv2852767	copy number loss	NA18981	Oligo aCGH	Probe signal intensity	1	429

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv2852762	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852763	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852764	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852765	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852766	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852767	Remapped	Perfect	NC_000001.11:g.(?_ 189360183)_(189481 799_?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	189,360,183	189,481,799
nssv2852762	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852763	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852764	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852765	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852766	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852767	Remapped	Perfect	NC_000001.10:g.(?_ 189329313)_(189450 929_?)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	189,329,313	189,450,929
nssv2852762	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552
nssv2852763	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552
nssv2852764	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552
nssv2852765	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552
nssv2852766	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552
nssv2852767	Submitted genomic		NC_000001.9:g.(?_1 87595936)_(1877175 52_?)del	NCBI36 (hg18)		NC_000001.9	Chr1	187,595,936	187,717,552

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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