nsv514189
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:25
- Validation:Not tested
- Clinical Assertions: No
- Region Size:89,089
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 544 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 544 SVs from 72 studies. See in: genome view
Overlapping variant regions from other studies: 213 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv514189 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nsv514189 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nsv514189 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2894931 | copy number loss | NA07048 | Oligo aCGH | Probe signal intensity | 1 | 479 |
| nssv2894932 | copy number loss | NA07055 | Oligo aCGH | Probe signal intensity | 0 | 446 |
| nssv2894933 | copy number loss | NA10835 | Oligo aCGH | Probe signal intensity | 1 | 494 |
| nssv2894934 | copy number loss | NA10857 | Oligo aCGH | Probe signal intensity | 0 | 476 |
| nssv2894935 | copy number loss | NA10863 | Oligo aCGH | Probe signal intensity | 1 | 476 |
| nssv2894936 | copy number loss | NA11832 | Oligo aCGH | Probe signal intensity | 1 | 448 |
| nssv2894937 | copy number loss | NA11839 | Oligo aCGH | Probe signal intensity | 0 | 463 |
| nssv2894938 | copy number loss | NA11843 | Oligo aCGH | Probe signal intensity | 1 | 479 |
| nssv2894939 | copy number loss | NA11892 | Oligo aCGH | Probe signal intensity | 1 | 445 |
| nssv2894940 | copy number loss | NA11918 | Oligo aCGH | Probe signal intensity | 1 | 429 |
| nssv2894941 | copy number loss | NA12043 | Oligo aCGH | Probe signal intensity | 1 | 469 |
| nssv2894942 | copy number loss | NA12044 | Oligo aCGH | Probe signal intensity | 1 | 447 |
| nssv2894943 | copy number loss | NA12239 | Oligo aCGH | Probe signal intensity | 1 | 445 |
| nssv2894944 | copy number loss | NA12248 | Oligo aCGH | Probe signal intensity | 1 | 494 |
| nssv2894945 | copy number loss | NA12264 | Oligo aCGH | Probe signal intensity | 1 | 480 |
| nssv2894946 | copy number loss | NA12287 | Oligo aCGH | Probe signal intensity | 1 | 453 |
| nssv2894947 | copy number loss | NA12335 | Oligo aCGH | Probe signal intensity | 1 | 484 |
| nssv2894948 | copy number loss | NA12340 | Oligo aCGH | Probe signal intensity | 1 | 483 |
| nssv2894949 | copy number loss | NA12376 | Oligo aCGH | Probe signal intensity | 1 | 450 |
| nssv2894950 | copy number loss | NA12485 | Oligo aCGH | Probe signal intensity | 1 | 472 |
| nssv2894951 | copy number loss | NA12489 | Oligo aCGH | Probe signal intensity | 1 | 447 |
| nssv2894952 | copy number loss | NA12760 | Oligo aCGH | Probe signal intensity | 1 | 479 |
| nssv2894953 | copy number loss | NA12878 | Oligo aCGH | Probe signal intensity | 1 | 501 |
| nssv2894954 | copy number loss | NA12892 | Oligo aCGH | Probe signal intensity | 1 | 472 |
| nssv2894955 | copy number loss | NA21362 | Oligo aCGH | Probe signal intensity | 1 | 450 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2894931 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894932 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894933 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894934 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894935 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894936 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894937 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894938 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894939 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894940 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894941 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894942 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894943 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894944 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894945 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894946 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894947 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894948 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894949 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894950 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894951 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894952 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894953 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894954 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894955 | Remapped | Perfect | NC_000003.12:g.(?_ 177576702)_(177665 790_?)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 177,576,702 | 177,665,790 |
| nssv2894931 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894932 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894933 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894934 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894935 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894936 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894937 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894938 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894939 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894940 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894941 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894942 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894943 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894944 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894945 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894946 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894947 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894948 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894949 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894950 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894951 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894952 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894953 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894954 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894955 | Remapped | Perfect | NC_000003.11:g.(?_ 177294490)_(177383 578_?)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 177,294,490 | 177,383,578 |
| nssv2894931 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894932 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894933 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894934 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894935 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894936 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894937 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894938 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894939 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894940 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894941 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894942 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894943 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894944 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894945 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894946 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894947 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894948 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894949 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894950 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894951 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894952 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894953 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894954 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 | ||
| nssv2894955 | Submitted genomic | NC_000003.10:g.(?_ 178777184)_(178866 272_?)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 178,777,184 | 178,866,272 |