nsv514333
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:25
- Validation:Not tested
- Clinical Assertions: No
- Region Size:12,545
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 169 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 169 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 40 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv514333 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nsv514333 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nsv514333 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2911596 | copy number loss | NA18500 | Oligo aCGH | Probe signal intensity | 1 | 474 |
| nssv2911597 | copy number loss | NA18501 | Oligo aCGH | Probe signal intensity | 1 | 478 |
| nssv2911598 | copy number loss | NA18510 | Oligo aCGH | Probe signal intensity | 1 | 478 |
| nssv2911599 | copy number loss | NA18523 | Oligo aCGH | Probe signal intensity | 1 | 439 |
| nssv2911600 | copy number loss | NA18853 | Oligo aCGH | Probe signal intensity | 1 | 481 |
| nssv2911601 | copy number loss | NA18909 | Oligo aCGH | Probe signal intensity | 1 | 452 |
| nssv2911602 | copy number loss | NA18917 | Oligo aCGH | Probe signal intensity | 1 | 483 |
| nssv2911603 | copy number loss | NA19095 | Oligo aCGH | Probe signal intensity | 1 | 433 |
| nssv2911604 | copy number loss | NA19097 | Oligo aCGH | Probe signal intensity | 1 | 447 |
| nssv2911605 | copy number loss | NA19099 | Oligo aCGH | Probe signal intensity | 1 | 443 |
| nssv2911606 | copy number loss | NA19100 | Oligo aCGH | Probe signal intensity | 1 | 441 |
| nssv2911607 | copy number loss | NA19108 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2911608 | copy number loss | NA19109 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2911609 | copy number loss | NA19113 | Oligo aCGH | Probe signal intensity | 1 | 463 |
| nssv2911610 | copy number loss | NA19115 | Oligo aCGH | Probe signal intensity | 1 | 434 |
| nssv2911611 | copy number loss | NA19118 | Oligo aCGH | Probe signal intensity | 1 | 433 |
| nssv2911612 | copy number loss | NA19153 | Oligo aCGH | Probe signal intensity | 1 | 452 |
| nssv2911613 | copy number loss | NA19154 | Oligo aCGH | Probe signal intensity | 1 | 465 |
| nssv2911614 | copy number loss | NA19160 | Oligo aCGH | Probe signal intensity | 1 | 487 |
| nssv2911615 | copy number loss | NA19172 | Oligo aCGH | Probe signal intensity | 1 | 452 |
| nssv2911616 | copy number loss | NA19210 | Oligo aCGH | Probe signal intensity | 1 | 485 |
| nssv2911617 | copy number loss | NA19211 | Oligo aCGH | Probe signal intensity | 1 | 481 |
| nssv2911618 | copy number loss | NA19223 | Oligo aCGH | Probe signal intensity | 1 | 465 |
| nssv2911619 | copy number loss | NA19257 | Oligo aCGH | Probe signal intensity | 1 | 437 |
| nssv2911620 | copy number loss | NA21404 | Oligo aCGH | Probe signal intensity | 1 | 429 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2911596 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911597 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911598 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911599 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911600 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911601 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911602 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911603 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911604 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911605 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911606 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911607 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911608 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911609 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911610 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911611 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911612 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911613 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911614 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911615 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911616 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911617 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911618 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911619 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911620 | Remapped | Perfect | NC_000005.10:g.(?_ 156150588)_(156163 132_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 156,150,588 | 156,163,132 |
| nssv2911596 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911597 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911598 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911599 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911600 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911601 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911602 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911603 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911604 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911605 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911606 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911607 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911608 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911609 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911610 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911611 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911612 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911613 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911614 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911615 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911616 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911617 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911618 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911619 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911620 | Remapped | Perfect | NC_000005.9:g.(?_1 55577598)_(1555901 42_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,577,598 | 155,590,142 |
| nssv2911596 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911597 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911598 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911599 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911600 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911601 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911602 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911603 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911604 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911605 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911606 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911607 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911608 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911609 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911610 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911611 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911612 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911613 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911614 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911615 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911616 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911617 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911618 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911619 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 | ||
| nssv2911620 | Submitted genomic | NC_000005.8:g.(?_1 55510176)_(1555227 20_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,510,176 | 155,522,720 |