nsv514604
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,917
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 325 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 325 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 106 SVs from 24 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv514604 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nsv514604 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nsv514604 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
---|---|---|---|---|---|---|
nssv2779669 | copy number loss | NA18500 | Oligo aCGH | Probe signal intensity | 1 | 474 |
nssv2780132 | copy number loss | NA18501 | Oligo aCGH | Probe signal intensity | 1 | 478 |
nssv2780347 | copy number loss | NA21400 | Oligo aCGH | Probe signal intensity | 1 | 449 |
nssv2780491 | copy number loss | NA21313 | Oligo aCGH | Probe signal intensity | 1 | 460 |
nssv2780658 | copy number loss | NA19179 | Oligo aCGH | Probe signal intensity | 1 | 455 |
nssv2781363 | copy number loss | NA18852 | Oligo aCGH | Probe signal intensity | 1 | 455 |
nssv2781532 | copy number gain | NA18518 | Oligo aCGH | Probe signal intensity | 3 | 458 |
nssv2781596 | copy number loss | NA21312 | Oligo aCGH | Probe signal intensity | 1 | 462 |
nssv2782355 | copy number loss | NA21303 | Oligo aCGH | Probe signal intensity | 1 | 437 |
nssv2783293 | copy number loss | NA19180 | Oligo aCGH | Probe signal intensity | 1 | 464 |
nssv2783761 | copy number loss | NA19201 | Oligo aCGH | Probe signal intensity | 1 | 463 |
nssv2784311 | copy number loss | NA19137 | Oligo aCGH | Probe signal intensity | 1 | 461 |
nssv2785177 | copy number loss | NA18854 | Oligo aCGH | Probe signal intensity | 1 | 494 |
nssv2785966 | copy number loss | NA21636 | Oligo aCGH | Probe signal intensity | 1 | 431 |
nssv2785982 | copy number loss | NA18488 | Oligo aCGH | Probe signal intensity | 1 | 447 |
nssv2786464 | copy number loss | NA21635 | Oligo aCGH | Probe signal intensity | 1 | 429 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv2779669 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2780132 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2780347 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2780491 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2780658 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2781363 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2781532 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2781596 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2782355 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2783293 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2783761 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2784311 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2785177 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2785966 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2785982 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2786464 | Remapped | Perfect | NC_000011.10:g.(?_ 25587790)_(2560470 6_?)del | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 25,587,790 | 25,604,706 |
nssv2779669 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2780132 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2780347 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2780491 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2780658 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2781363 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2781532 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2781596 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2782355 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2783293 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2783761 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2784311 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2785177 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2785966 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2785982 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2786464 | Remapped | Perfect | NC_000011.9:g.(?_2 5609336)_(25626252 _?)del | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 25,609,336 | 25,626,252 |
nssv2779669 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2780132 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2780347 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2780491 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2780658 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2781363 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2781532 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2781596 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2782355 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2783293 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2783761 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2784311 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2785177 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2785966 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2785982 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 | ||
nssv2786464 | Submitted genomic | NC_000011.8:g.(?_2 5565912)_(25582828 _?)del | NCBI36 (hg18) | NC_000011.8 | Chr11 | 25,565,912 | 25,582,828 |