nsv515145
- Organism: Homo sapiens
- Study:nstd46 (Campbell et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:17,970
- Publication(s):Campbell et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1004 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 1006 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 483 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv515145 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nsv515145 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nsv515145 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 580,578 | 598,547 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv2974369 | copy number loss | NA18862 | Oligo aCGH | Probe signal intensity | 0 | 485 |
| nssv2974370 | copy number loss | NA18863 | Oligo aCGH | Probe signal intensity | 1 | 474 |
| nssv2974371 | copy number loss | NA18873 | Oligo aCGH | Probe signal intensity | 1 | 433 |
| nssv2974372 | copy number loss | NA18875 | Oligo aCGH | Probe signal intensity | 1 | 443 |
| nssv2974373 | copy number loss | NA18933 | Oligo aCGH | Probe signal intensity | 1 | 448 |
| nssv2974374 | copy number loss | NA19102 | Oligo aCGH | Probe signal intensity | 1 | 454 |
| nssv2974375 | copy number loss | NA19108 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2974376 | copy number loss | NA19109 | Oligo aCGH | Probe signal intensity | 1 | 451 |
| nssv2974377 | copy number loss | NA19149 | Oligo aCGH | Probe signal intensity | 1 | 447 |
| nssv2974378 | copy number loss | NA19159 | Oligo aCGH | Probe signal intensity | 1 | 449 |
| nssv2974379 | copy number loss | NA19198 | Oligo aCGH | Probe signal intensity | 1 | 488 |
| nssv2974380 | copy number loss | NA19201 | Oligo aCGH | Probe signal intensity | 1 | 463 |
| nssv2974381 | copy number loss | NA19202 | Oligo aCGH | Probe signal intensity | 1 | 466 |
| nssv2974382 | copy number loss | NA19210 | Oligo aCGH | Probe signal intensity | 1 | 485 |
| nssv2974383 | copy number loss | NA19211 | Oligo aCGH | Probe signal intensity | 1 | 481 |
| nssv2974384 | copy number loss | NA19235 | Oligo aCGH | Probe signal intensity | 1 | 458 |
| nssv2974385 | copy number loss | NA19248 | Oligo aCGH | Probe signal intensity | 1 | 482 |
| nssv2974386 | copy number loss | NA19249 | Oligo aCGH | Probe signal intensity | 1 | 487 |
| nssv2974387 | copy number loss | NA21600 | Oligo aCGH | Probe signal intensity | 1 | 437 |
| nssv2974388 | copy number loss | NA21601 | Oligo aCGH | Probe signal intensity | 1 | 436 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv2974369 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974370 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974371 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974372 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974373 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974374 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974375 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974376 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974377 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974378 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974379 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974380 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974381 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974382 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974383 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974384 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974385 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974386 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974387 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974388 | Remapped | Perfect | NC_000009.12:g.(?_ 590578)_(608547_?) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 590,578 | 608,547 |
| nssv2974369 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974370 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974371 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974372 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974373 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974374 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974375 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974376 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974377 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974378 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974379 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974380 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974381 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974382 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974383 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974384 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974385 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974386 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974387 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974388 | Remapped | Perfect | NC_000009.11:g.(?_ 590578)_(608547_?) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 590,578 | 608,547 |
| nssv2974369 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974370 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974371 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974372 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974373 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974374 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974375 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974376 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974377 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974378 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974379 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974380 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974381 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974382 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974383 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974384 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974385 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974386 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974387 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 | ||
| nssv2974388 | Submitted genomic | NC_000009.10:g.(?_ 580578)_(598547_?) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 580,578 | 598,547 |