nsv519867
- Organism: Homo sapiens
- Study:nstd21 (Shaikh et al. 2009)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI35 (hg17)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:269,536
- Publication(s):Shaikh et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1488 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 1488 SVs from 91 studies. See in: genome view
Overlapping variant regions from other studies: 52 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv519867 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 35,593,041 | 35,862,576 |
| nsv519867 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 35,818,107 | 36,087,642 |
| nsv519867 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000002.9 | Chr2 | 35,729,758 | 35,999,293 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Zygosity |
|---|---|---|---|---|
| nssv659176 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv686276 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv676691 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv694581 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv704182 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv698222 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
| nssv699422 | copy number loss | SNP array | SNP genotyping analysis | Heterozygous |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv659176 | Remapped | Perfect | NC_000002.12:g.(?_ 35593041)_(3585530 7_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,593,041 | 35,855,307 |
| nssv686276 | Remapped | Perfect | NC_000002.12:g.(?_ 35593041)_(3586257 6_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,593,041 | 35,862,576 |
| nssv676691 | Remapped | Perfect | NC_000002.12:g.(?_ 35619849)_(3586257 6_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,619,849 | 35,862,576 |
| nssv694581 | Remapped | Perfect | NC_000002.12:g.(?_ 35691554)_(3570328 4_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,691,554 | 35,703,284 |
| nssv704182 | Remapped | Perfect | NC_000002.12:g.(?_ 35801621)_(3581019 1_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,801,621 | 35,810,191 |
| nssv698222 | Remapped | Perfect | NC_000002.12:g.(?_ 35801621)_(3581145 7_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,801,621 | 35,811,457 |
| nssv699422 | Remapped | Perfect | NC_000002.12:g.(?_ 35810191)_(3581145 7_?)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 35,810,191 | 35,811,457 |
| nssv659176 | Remapped | Perfect | NC_000002.11:g.(?_ 35818107)_(3608037 3_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,818,107 | 36,080,373 |
| nssv686276 | Remapped | Perfect | NC_000002.11:g.(?_ 35818107)_(3608764 2_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,818,107 | 36,087,642 |
| nssv676691 | Remapped | Perfect | NC_000002.11:g.(?_ 35844915)_(3608764 2_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,844,915 | 36,087,642 |
| nssv694581 | Remapped | Perfect | NC_000002.11:g.(?_ 35916620)_(3592835 0_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 35,916,620 | 35,928,350 |
| nssv704182 | Remapped | Perfect | NC_000002.11:g.(?_ 36026687)_(3603525 7_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 36,026,687 | 36,035,257 |
| nssv698222 | Remapped | Perfect | NC_000002.11:g.(?_ 36026687)_(3603652 3_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 36,026,687 | 36,036,523 |
| nssv699422 | Remapped | Perfect | NC_000002.11:g.(?_ 36035257)_(3603652 3_?)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 36,035,257 | 36,036,523 |
| nssv659176 | Submitted genomic | NC_000002.9:g.(?_3 5729758)_(35992024 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,729,758 | 35,992,024 | ||
| nssv686276 | Submitted genomic | NC_000002.9:g.(?_3 5729758)_(35999293 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,729,758 | 35,999,293 | ||
| nssv676691 | Submitted genomic | NC_000002.9:g.(?_3 5756566)_(35999293 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,756,566 | 35,999,293 | ||
| nssv694581 | Submitted genomic | NC_000002.9:g.(?_3 5828271)_(35840001 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,828,271 | 35,840,001 | ||
| nssv704182 | Submitted genomic | NC_000002.9:g.(?_3 5938338)_(35946908 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,938,338 | 35,946,908 | ||
| nssv698222 | Submitted genomic | NC_000002.9:g.(?_3 5938338)_(35948174 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,938,338 | 35,948,174 | ||
| nssv699422 | Submitted genomic | NC_000002.9:g.(?_3 5946908)_(35948174 _?)del | NCBI35 (hg17) | NC_000002.9 | Chr2 | 35,946,908 | 35,948,174 |