nsv52
- Organism: Homo sapiens
- Study:nstd1 (Tuzun et al. 2005)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI35 (hg17)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:3,412
- Publication(s):Tuzun et al. 2005
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1863 SVs from 82 studies. See in: genome view
Overlapping variant regions from other studies: 1798 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 958 SVs from 41 studies. See in: genome view
Overlapping variant regions from other studies: 135 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv52 | Remapped | Pass | GRCh38.p12 | Primary Assembly | Second Pass | NC_000010.11 | Chr10 | 46,486,180 | 46,489,591 | - |
| nsv52 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 47,057,753 | - | 47,063,272 |
| nsv52 | Remapped | Pass | GRCh37.p13 | PATCHES | Second Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 757,295 | 760,706 | - |
| nsv52 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 46,477,759 | - | 46,483,278 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv52 | inversion | SAMN00000376 | Sequencing | Paired-end mapping | 297 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|
| nssv52 | Remapped | Pass | NC_000010.11:g.(46 486180_?)_(4648959 1_?)inv | GRCh38.p12 | Second Pass | NC_000010.11 | Chr10 | 46,486,180 | 46,489,591 | - |
| nssv52 | Remapped | Pass | NW_003871068.1:g.( 757295_?)_(760706_ ?)inv | GRCh37.p13 | Second Pass | NW_003871068.1 | Chr10|NW_0 03871068.1 | 757,295 | 760,706 | - |
| nssv52 | Remapped | Perfect | NC_000010.10:g.(47 057753_?)_(?_47063 272)inv | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 47,057,753 | - | 47,063,272 |
| nssv52 | Submitted genomic | NC_000010.8:g.(464 77759_?)_(?_464832 78)inv | NCBI35 (hg17) | NC_000010.8 | Chr10 | 46,477,759 | - | 46,483,278 |