nsv5205285
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:209
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 151 SVs from 46 studies. See in: genome view
Overlapping variant regions from other studies: 151 SVs from 46 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nsv5205285 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000010.11 | Chr10 | 7,751,867 | 7,752,075 | ||
nsv5205285 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 7,793,830 | 7,794,038 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv16754936 | alu deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
---|---|---|---|---|---|---|---|---|---|
nssv16754936 | Submitted genomic | NC_000010.11:g.775 1867_7752075del | GRCh38.p13 | NC_000010.11 | Chr10 | 7,751,867 | 7,752,075 | ||
nssv16754936 | Remapped | Perfect | NC_000010.10:g.779 3830_7794038del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 7,793,830 | 7,794,038 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
Variant Call ID | Allele Frequency (AF) |
---|---|
nssv16754936 | 0.852 |