nsv5233838
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:9,000
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 287 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 285 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 109 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5233838 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000005.10 | Chr5 | 141,179,801 | 141,188,800 | ||
| nsv5233838 | Remapped | Good | GRCh37.p13 | Primary Assembly | Second Pass | NC_000005.9 | Chr5 | 140,559,382 | 140,568,373 |
| nsv5233838 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 414,977 | 423,976 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16848362 | copy number variation | Sequencing | Read depth |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv16848362 | Submitted genomic | GRCh38.p13 | NC_000005.10 | Chr5 | 141,179,801 | 141,188,800 | ||
| nssv16848362 | Remapped | Perfect | GRCh37.p13 | First Pass | NW_004775428.1 | Chr5|NW_00 4775428.1 | 414,977 | 423,976 |
| nssv16848362 | Remapped | Good | GRCh37.p13 | Second Pass | NC_000005.9 | Chr5 | 140,559,382 | 140,568,373 |